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Philosophy of plants

The philosophy of plants - Banksia spinulosa

What are plants?


Structural and Phylogenetic Definition

In evolutionary biology, plants are formally defined by a set of structural and phylogenetic characteristics that distinguish them as a monophyletic lineage within the Archaeplastida, a eukaryotic supergroup that includes red and green algae. This lineage is marked by the origin of chloroplasts via primary endosymbiosis with cyanobacteria, a defining event that enabled oxygenic photosynthesis using chlorophylls a and b. Within this group, land plants (Embryophyta) share additional traits: a haplodiplontic life cycle with multicellular haploid and diploid phases, the retention of the developing embryo, and the presence of protective and transport tissues such as the cuticle, stomata, and vascular systems. These features reflect both evolutionary descent and key adaptations to terrestrial life.

Such structural and developmental features are not arbitrary but represent necessary conditions that mark a plant’s evolutionary identity and distinguish it from animals, fungi, and protists. They define plants as sessile, modular organisms with rigid cell walls composed of cellulose, intercellular plasmodesmata for signaling, and a general tendency toward indeterminate growth. These characteristics together specify the morphological and reproductive ground plan of plants, allowing them to adapt and persist across diverse terrestrial ecosystems. While some traits may appear in other lineages through convergence, it is the particular combination of these features—underpinned by shared ancestry—that constitutes the structural and phylogenetic identity of plants.

Functional and Agential Definition

Beyond their structure and ancestry, plants are also distinguished by their functional integration and agential capacities as living systems. Functionally, they are primary producers that transform solar energy into chemical energy via photosynthesis, forming the energetic and ecological foundation of terrestrial life. They regulate their internal states through homeostatic mechanisms, optimize resource acquisition through dynamic root and shoot architectures, and coordinate complex reproductive strategies through biochemical signaling and environmental sensing. Many plants display remarkable phenotypic plasticity, allowing them to tailor their development and physiology to specific environmental contexts without relocating.

From an agential perspective, plants exhibit purposive behavior in the biological sense: they pursue survival, growth, and reproduction through autonomous, self-organizing processes. They sense and respond to light, gravity, touch, chemicals, and electrical cues, adjusting growth patterns and physiological states accordingly. Their activity is temporally structured by endogenous rhythms, enabling predictive coordination with environmental cycles. Plants communicate both within and between organisms using chemical, hydraulic, and electrical signals, suggesting a distributed form of cognition grounded in their physiological networks. As living agents, plants do not merely react—they enact strategies to maintain themselves over time, demonstrating a form of agency that, while non-neural, is deeply embedded in their biological organization.

1. Philosophy of Plants: an introduction

Over the past century and a half, science has revealed that the universe itself began from a single origin—the Big Bang approximately 13.7 billion years ago—and that all life on Earth shares a common origin dating back roughly 3.5 billion years. This deep evolutionary history means that every living organism, from the simplest microbe to the most complex animal or plant, is connected through an unbroken lineage of ancestry and heredity.

In this grand continuum, plants hold a fundamental place. The last common ancestor shared by plants and animals lived about 1.6 billion years ago, likely a single-celled protozoan-like organism from which diverse multicellular life forms later emerged. Multicellular animals appeared somewhat later, just over 0.5 billion years ago, diverging from the line that would give rise to the vast diversity of plants.

Because plants and animals share this deep evolutionary heritage, they also share many genetic and biochemical pathways. Humans and plants alike carry genes that reflect their common metabolic foundations, highlighting the continuity of life despite the vast differences in form and function.

This evolutionary perspective reveals life as a spectrum of complexity woven together by common descent and shaped by environmental adaptation. Far from being isolated or fundamentally distinct, plants are integral participants in the story of life—a story of diversification, innovation, and connection that spans billions of years and encompasses all living beings.

The philosophy of plants is an emerging interdisciplinary field that explores the conceptual, ethical, epistemological, and ontological significance of plant life. At its core, it asks: What does it mean to be a plant—and what does this mean for how we understand life itself?

East and West

Eastern and Western traditions have approached plant life from markedly different philosophical standpoints, shaping both scientific attitudes and conceptual frameworks. While Western science historically emphasized classification, structure, and mechanistic explanation—often treating plants as passive, insentient matter—Eastern philosophies such as Daoism, Buddhism, and Jainism emphasized relationality, process, and the intrinsic value of all life forms. In the East, plants were seen as dynamic participants in an interconnected natural order, not merely objects of use. These holistic, non-anthropocentric perspectives offer valuable alternatives to reductive models of biology and resonate strongly with contemporary trends in plant science, such as systems thinking, ecological agency, and plant behavior. By integrating these diverse worldviews, science gains not only empirical insights but also a richer, more inclusive understanding of what plants are and how they matter.

Historical background

For much of human history, the study of plants has centered on developing a descriptive language—an organized vocabulary for naming plant kinds and classifying their observable features. This effort gave rise to two foundational domains: taxonomy, concerned with identifying and ordering plant diversity, and morphology, which systematized the description of plant form and structure. The scientific value of these classifications increased dramatically when local, often vernacular, naming systems gave way to universal frameworks. This transition was largely shaped in Early Modern Europe through the emergence of scientific societies and the adoption of formal systems of communication. Central to this development was the work of Carl Linnaeus, whose binomial nomenclature and taxonomic principles laid the groundwork for a globally consistent botanical science.

During this period, questions concerning the purpose, agency, origins, or transformation of living beings remained largely peripheral to botanical inquiry. Such matters were typically addressed within religious or metaphysical frameworks, rather than through empirical investigation. While Aristotle had long before acknowledged the purposiveness (telos) and inherent agency of living beings, it was not until Darwin’s theory of evolution by natural selection that these phenomena received a naturalistic reinterpretation. Darwin provided a scientific account of biological change that appeared, to many, to dissolve the need for any discussion of intrinsic purpose or agency when explaining life.

This dismissal of purposiveness proved premature. The evident goal-directedness of biological systems—their capacity to initiate, regulate, and adapt in pursuit of survival and reproduction—remained a central feature of life that resisted purely mechanistic explanation. Today, the philosophy of biology is increasingly engaged in re-examining these foundational issues. Far from being eliminated, agency is now recognized as a distinguishing feature of the living, one that sets organisms apart from the inanimate and the dead. The challenge is no longer whether biological systems are agential, but how this agency can be understood within a naturalistic and scientifically coherent framework.

The historical development of plant science—rooted in taxonomy and morphology—has profoundly shaped both the ontology (what is taken to exist in the plant world) and the epistemology (how knowledge about plants is generated and validated) of the field.

By focusing on classification and structure, early botanical science established a stable ontology of kinds: plant species were conceived as discrete, nameable entities with identifiable forms. This ontological commitment to static categories reflected both the theological worldview of the time (in which species were created and fixed) and the pragmatic needs of communication, agriculture, and medicine. The Linnaean system, by formalizing these categories, reinforced the idea of plants as passive, structural objects to be catalogued rather than dynamic, purposive agents to be understood in terms of behavior or function.

Epistemologically, this emphasis privileged descriptive and comparative methods over causal or explanatory frameworks. Knowledge of plants was constructed through observation, collection, and morphological comparison, with little attention paid to internal processes, adaptive behavior, or evolutionary change. Explanation, when it occurred, was externalized—either in theological terms (divine design) or later in purely mechanistic models of physical causation.

As a result, questions about what plants do, intend, or respond to—and what kind of agential status they might possess—were largely marginalized or framed through anthropocentric or teleological metaphors. The naturalistic turn initiated by Darwin did begin to shift this framing, yet even evolutionary theory was initially absorbed into a framework that viewed organisms as passive substrates of external forces.

Only recently has plant science begun to interrogate these inherited ontological and epistemological assumptions. The re-emergence of interest in biological agency, goal-directedness, and cognitive-like processes challenges the legacy view of plants as mere structural entities. It calls for a rethinking of what plants are—not just as collections of parts, but as integrated, responsive systems—and how we come to know them, not just through classification, but through dynamic, process-oriented investigation.

In short, the historical focus on naming and describing plants created a foundational—but limited—framework for understanding vegetal life. Today’s shifts in plant ontology and epistemology are efforts to move beyond this descriptive legacy toward a richer, more integrated understanding of plants as living agents.

Contemporary approach

Long regarded as passive or peripheral to the drama of conscious existence, plants are now being reexamined not only through scientific advances but also through philosophical reflection. This reexamination challenges deep-seated assumptions about mind, agency, value, and the human place in nature (Marder, 2013; Calvo et al., 2020).

Philosophy has long overlooked vegetal life. In ancient texts, plants were typically placed at the lowest rung of the “great chain of being”—possessing only nutritive soul, without sensation or motion (Aristotle, De Anima). Nevertheless, early thinkers like Theophrastus, the “Father of Botany,” explored plant behavior empirically (Enquiry into Plants, c. 300 BCE), while later figures such as Goethe (The Metamorphosis of Plants, 1790) and Darwin & Darwin (The Power of Movement in Plants, 1880) proposed dynamic, responsive views of plant form and movement. These works foreshadow key themes of modern plant philosophy: transformation, adaptation, and non-neural intelligence.

In the modern context, the philosophy of plants sits at the intersection of the philosophy of biology and the broader philosophical tradition. It draws on themes from the philosophy of science—such as the nature of explanation, evolving modes of inquiry, and the refinement of conceptual categories used to understand living systems—while engaging directly with the distinctive features of biological understanding. From the philosophy of biology, it inherits foundational questions about function, evolution, agency, and the definition of life, but extends these further by challenging assumptions that have historically privileged animal models of cognition and purposiveness.

At the same time, the philosophy of plants engages wider philosophical debates in ontology (Arber, 1950/2018; Hall, 2011; Marder, 2013), ethics (Hall, 2011; Vieira, 2011; Kallhoff et al., 2018), epistemology (Kohn, 2013; Gagliano, 2018), and phenomenology (Jonas, 1966/2001; Marder, 2013; Vieira, 2015), often questioning anthropocentric and human-exceptionalist frameworks. In this way, plant philosophy is not merely a branch of the philosophy of biology—it functions as a critical provocation to rethink the foundations and scope of philosophy itself.

The terms plant philosophy and philosophy of plants are sometimes used interchangeably but can carry different emphases. The philosophy of plants generally refers to a rigorous philosophical analysis of plant life in its biological, ecological, and ethical dimensions. Plant philosophy, by contrast, often signals a more speculative or poetic exploration—an attempt to think with plants, or even from a vegetal perspective. Both modes contribute to decentering anthropocentric thought and opening new conceptual ground.

The field bridges multiple domains. Scientifically, it engages with cutting-edge research into plant behavior, communication, adaptation, and cognition—much of which challenges the traditional view that intelligence requires a nervous system (Trewavas, 2017; Gagliano, 2018). Ethically, it asks whether plants might be moral subjects, raising questions about intrinsic value, interdependence, and our obligations in an age of ecological crisis (Hall, 2011). Metaphysically, it prompts a reassessment of foundational categories such as autonomy, sentience, intelligence, and even life itself.

This shift from traditional concerns—which saw plants as passive, unconscious, and lacking agency—to modern concerns with plant sentience, communication, and self-organization reflects both empirical and philosophical developments. Where earlier science focused on classification and utility (e.g., Linnaeus, 1735), contemporary work emphasizes dynamic processes, ecological entanglement, and plant agency.

Authoritative modern histories of botany—such as Alan Morton’s History of Botanical Science (1981) and more recent works by American historians like Greene (1983), E.C. Spary, Vassiliki Betty Smocovitis, and James Larson—trace the development of plant science from natural history and taxonomy to experimental biology, revealing how shifting scientific paradigms have shaped human conceptions of plant life (Morton, 1981; Spary, 2000; Smocovitis, 1996; Larson, 1971).

The growing significance of plant philosophy is driven by several converging pressures. Climate change and biodiversity loss have made the vitality of plant systems more visible and urgent. Plants form the backbone of ecosystems, regulate atmospheric carbon, and sustain all terrestrial life—yet their conceptual and ethical standing remains underdeveloped. Perhaps the traditional tools of scientific taxonomy can be employed to provide a classification of plants that examines the relationship between humans and plants? At the same time, increasing dialogue between biology and the humanities has created fertile ground for rethinking life from the ground up—literally and figuratively.

The “New Biology” represents a fundamental reframing of theoretical biology, extending beyond the gene-centric framework of the Modern Synthesis and building upon the Extended Evolutionary Synthesis (EES) by incorporating biological agency, cognition, and multiscale coordination into a processual view of life. Rooted in contemporary developments across evolutionary theory, developmental biology, systems biology, and the philosophy of biology, this approach reconceives living systems as active, purposive, and context-sensitive agents whose evolution and development are shaped not only by external selection but also by internal dynamics, plasticity, and organismal responsiveness. By shifting focus from static entities to dynamic processes, the new biology opens pathways toward a more integrated understanding of evolution, development, and function—one that may redefine core concepts such as causation, individuality, and purpose in the life sciences. Notable here is a modern shift in research emphasis from structures to functions and a focus on agency, process, and scale.

This article surveys the philosophy of plants as a dynamic and developing field. It begins with historical perspectives, moves through recent scientific discoveries and philosophical debates, and concludes by outlining new directions in ethics, ontology, and ecological thought. In doing so, it offers not just a view of plants, but a view with them—an invitation to rethink the conditions of life, thought, and interconnection from a vegetal perspective.

2. Plants in Ancient Philosophy

The philosophical investigation of plant life has deep roots in classical thought, where plants were not entirely overlooked but were often framed within hierarchical models of life and mind. In ancient Greek philosophy, plants were understood as living beings with a degree of soul (as an animating principle)—albeit the lowest kind. Aristotle’s tripartite theory of soul (psyche) placed plants at the base, attributing to them a nutritive soul responsible for growth, reproduction, and metabolism, but not sensation or rationality (Aristotle, De Anima, II.2). In this view, plants were alive but fundamentally insentient—biologically active yet cognitively inert.

Despite this ranking, Aristotle did not disregard plants entirely. He recognized their responsiveness to environmental conditions and noted their capacity to seek nourishment and preserve their form, laying the groundwork for later biological inquiry (Brennan & Brittain, 2002). His student Theophrastus, often regarded as the “Father of Botany,” greatly expanded the philosophical and observational study of plants. In Enquiry into Plants, Theophrastus documented plant growth, reproduction, and adaptation with a scientific rigor that would not be matched for centuries. He approached plants as organized, purposive beings, even if lacking conscious intention (Theophrastus, trans. 1916).

In medieval natural philosophy, plant life was often subordinated to theological frameworks but retained some Aristotelian structure. Scholastic thinkers such as Albertus Magnus and Thomas Aquinas continued to regard plants as animated by the nutritive soul. Yet, by the early modern period, this vitalistic and hierarchical understanding began to erode. The rise of mechanistic biology in the 17th century increasingly treated plants as passive machines—systems of chemical and mechanical functions devoid of agency, purpose, or interiority.

This historical shift—from philosophical curiosity to mechanical reduction—marked a long period in which plants were intellectually marginalized. Their dynamic behaviors were stripped of intentionality, and their roles were largely functional: food, medicine, ornament, or backdrop. Only recently, with the confluence of ecological crisis, new scientific discoveries, and revived philosophical interest, have plants begun to reemerge as subjects worthy of ontological and ethical consideration.

This historical trajectory—from Aristotle’s vital ontology to early modern mechanistic reduction—shaped both the epistemology and ontology of plant science in Europe. Plants came to be understood not as purposive, responsive beings but as passive structures to be classified and dissected. Their dynamic capacities were overlooked in favor of static categories and mechanistic explanations. As a result, plant life was intellectually marginalized for centuries. Only recently has this legacy been challenged, as renewed scientific and philosophical interest reconsiders plants as agential, adaptive systems worthy of ontological and epistemological reconsideration.

3. Mechanism to Mind: plant cognition

The scientific and philosophical status of plant intelligence underwent a dramatic transformation between the early modern period and the present day. Following the mechanistic revolution of the 17th century, living systems—including plants—were increasingly understood in terms of mechanical causality and physical processes. Thinkers such as René Descartes explicitly denied consciousness or intelligence to non-human organisms, and plants were assimilated into this reductionist model as passive, reactive machines—entities without sensation, intention, or agency (Descartes, 1996). This mechanistic paradigm dominated plant biology through the Enlightenment and into the 20th century.

Yet within this broader trend, moments of dissent persisted. One of the most significant came from Charles Darwin, who was deeply fascinated by plant movement and behavior. In The Power of Movement in Plants (1880), Darwin and his son Francis documented how roots and shoots responded to gravity, light, touch, and obstacles. They likened the root apex to a brain-like structure in animals—coordinating perception and behavior in a decentralized but purposeful manner. Darwin’s work suggested that plants possess a form of functional intelligence, distributed across their tissues and embedded in their physiology (Darwin & Darwin, 1880).

Despite these early insights, the mainstream of 20th-century biology continued to view cognition as a property of brains and nervous systems. Plants were deemed incapable of cognition by definition, as they lacked neurons or centralized control systems. The default assumption was that plant behavior was preprogrammed and devoid of flexibility or learning.

This began to change at the turn of the 21st century. Advances in molecular biology, electrophysiology, and ecology revealed that plants exhibit complex, adaptive behaviors: they assess risks, allocate resources strategically, learn from experience, and communicate with other organisms. Such findings have led some researchers to propose the existence of plant cognition—understood not as conscious thought, but as the ability to process information and modify behavior in response to environmental challenges (Calvo & Keijzer, 2011; Trewavas, 2014).

The return of interest in plant sentience and intelligence has generated both enthusiasm and controversy. Critics warn against anthropomorphism and stress the need for rigorous definitions of cognition. Advocates argue that excluding plants from cognitive discourse reflects a bias toward animal models rather than an objective assessment of evidence. This debate is not merely semantic—it reshapes how we understand mind, intelligence, and the evolutionary distribution of agency.

In short, plant cognition marks a shift away from mechanistic reduction and toward a broader, more inclusive conception of life. It invites a redefinition of intelligence not as the property of brains alone, but as a process distributed across different forms of living systems—including those without neurons.

4. Do Plants Think?

The question “Do plants think?” invites both fascination and skepticism. For centuries, thinking was assumed to be the exclusive domain of animals—especially humans—with centralized nervous systems and brains. Yet emerging research in plant biology challenges this assumption by revealing cognitive-like processes in organisms that lack neurons entirely. While plants do not “think” in any conscious or sentient sense, they appear capable of information processing, decision-making, and problem-solving—behaviors typically associated with cognitive systems.

Contemporary research on plant cognition explores how plants perceive their environment, integrate diverse signals, and adjust their behavior accordingly. For instance, studies show that plants can learn from experience: in a widely cited experiment, Mimosa pudica plants were repeatedly dropped from a short height. Initially, the leaves closed in defense, but over time, the plants stopped responding—indicating habituation, a basic form of learning (Gagliano et al., 2014). This behavioral change persisted for weeks, even without a brain or memory center.

Plants also exhibit decision-making under uncertainty. Pea plants, when presented with varying nutrient distributions in the soil, adjust their root growth to favor the richer environment—suggesting a form of risk-sensitive foraging (Shemesh et al., 2020). They monitor light, moisture, touch, and even the presence of nearby competitors or kin, often prioritizing growth or reproduction strategies accordingly.

These observations have led some scholars to argue that plants engage in non-neural cognition—not as metaphor, but as a scientifically defensible framework. Unlike animals, whose cognition is largely centralized, plant intelligence is distributed across cells, tissues, and networks. Electrical signaling, hormonal gradients, and even hydraulic cues allow plants to coordinate their behavior internally and with others in their environment (Volkov, 2006; Calvo et al., 2017).

One controversial development in this area is the proposal of plant neurobiology, which draws parallels between plant signaling and neural activity. Although plants have no neurons, proponents argue that the electrochemical dynamics in plants fulfill analogous roles—sensing stimuli, transmitting signals, and generating coordinated responses. Critics contend that such analogies risk anthropomorphism and overstate the evidence, but defenders respond that the terminology aims to broaden—not blur—our understanding of cognition across life forms (Baluška & Mancuso, 2009).

The deeper philosophical issue is whether cognition requires a nervous system at all. If cognition is defined functionally—as the capacity to acquire, process, and act on information—then plants may indeed qualify as cognitive agents. This reframing does not reduce cognition to computation but opens it up to embodied, adaptive, and context-sensitive forms found throughout living systems. It challenges the neurocentric bias in philosophy of mind and cognitive science, offering a richer and more inclusive account of intelligence in nature.

Within the APS framework, plant cognition is not treated as an exceptional or metaphorical case, but as a natural expression of biological agency. Plants are understood as agential systems—self-organizing, self-regulating, and adaptively engaged with their environments. Cognition, in this view, is an emergent property of the dynamic, multiscale processes through which living systems pursue their own persistence and reproductive success. Rather than seeing intelligence as a structure-bound trait tied to nervous systems, APS frames it as a process: distributed, embodied, and embedded within the functional organization of life itself.

5. Plant Agency & Biological Purpose

The concept of agency—the capacity to initiate and coordinate action—has traditionally been reserved for animals, especially those with brains, intention, and awareness. Yet when agency is grounded not in psychology but in biological organization and evolutionary function, it provides a framework for understanding how plants act purposively in the world. Plants do not possess minds, but they display behaviors that are autonomous, adaptive, and coordinated toward their own persistence. From this perspective, plant agency is real, not representational—a form of goal-directedness intrinsic to life.

In biology, agency can be understood as a system’s capacity to regulate itself in relation to its environment in ways that preserve its own viability over time. Plants satisfy this definition robustly. They sense gradients of light, moisture, nutrients, mechanical stress, and chemical signals. They adjust their physiology, growth, and development to cope with challenges, allocate energy strategically, and respond to both immediate stimuli and long-term environmental trends (Trewavas, 2003). Their responses are not simply reactive—they are modulated based on context, memory, and anticipation of future conditions.

One of the clearest examples of plant agency is seen in phenotypic plasticity: the ability of a single genotype to generate different forms or behaviors depending on environmental inputs. A climbing plant may grow tendrils when it encounters a support, or produce broader leaves in shaded conditions. These decisions—encoded at the level of cellular signaling and gene expression—reveal context-sensitive regulation that goes beyond mechanical determinism. Such flexibility suggests that plants are not passive products of their environment, but active participants in shaping their own developmental trajectories.

From an evolutionary standpoint, these goal-directed behaviors are not accidental. Natural selection favors organisms that maintain functional coherence in changing conditions—those that can sustain metabolism, defend themselves, reproduce, and evolve. This functional organization gives rise to biological purpose, not in the teleological sense of final causes, but in the sense of functions oriented toward persistence (Moreno & Mossio, 2015). Plants are agents in this sense: systems organized to maintain their own existence through internally guided interactions with their surroundings.

Recognizing plant agency forces a rethinking of long-held philosophical distinctions—between mind and body, subject and object, agent and environment. It also expands our understanding of intentionality beyond consciousness, framing it instead as a feature of self-organizing, adaptive systems. This aligns with newer process-oriented views in biology and philosophy that treat life as an active, relational phenomenon.

In short, plants may not have goals in a mental sense, but they are oriented toward survival and flourishing in ways that are empirically detectable and evolutionarily intelligible. Their agency is real, even if it is rooted in biology rather than psychology.

6. Plant Communication & Networks

Plants, long assumed to be solitary and silent organisms, are now recognized as integral participants in complex communication networks connecting individuals and species across ecosystems. This “secret life” of plants involves sophisticated chemical, electrical, and biochemical signaling that enables interaction, cooperation, and the transmission of environmental information. The metaphor of a “wood wide web” captures how plants form ecological communities with dynamic information flows reminiscent of social networks.

A prominent example is the mycorrhizal network—a symbiotic association between fungal hyphae and plant roots. These underground fungal connections link multiple plants, facilitating the transfer of water, nutrients, and chemical signals (Simard et al., 1997). Through this network, plants share resources and convey distress signals, such as warnings of herbivore attacks. Such exchanges demonstrate community-level coordination that challenges traditional notions of individual autonomy and competition.

Beyond fungal channels, plants communicate via diverse chemical signals, including volatile organic compounds (VOCs) released into the air. When threatened, some plants emit VOCs that induce defensive responses in neighboring plants, effectively “arming” their community against predators (Heil & Karban, 2010). Roots exude chemicals that suppress competitors or promote symbiosis, revealing a chemically mediated underground social life.

Plants also exhibit kin recognition, selectively favoring genetically related individuals by adjusting resource allocation or root growth to reduce competition (Dudley & File, 2007). These context-sensitive behaviors indicate adaptive discrimination rather than mechanistic reaction, expanding the scope of plant agency.

Philosophically, plant communication invites a rethinking of meaning, representation, and agency beyond animal models. By actively sending and receiving signals that shape behavior, plants participate in ecological networks of signification—processes of encoding, transmitting, and decoding information with tangible ecological consequences (Marder, 2013). This relational perspective situates plants not as isolated objects but as agential beings embedded in webs of interaction, raising important questions about individuality and ecological ethics.

These discoveries compel a shift from viewing plants as passive ecosystem components to recognizing them as active communicators, collaborators, and co-creators of their environments. Communication and relationality emerge as fundamental dimensions of plant life, enriching scientific understanding and philosophical inquiry alike.

Plants & ethics

The question of whether plants deserve moral consideration challenges traditional ethical frameworks that have historically prioritized sentient animals and humans. As scientific and philosophical inquiry reveals increasing complexity in plant life—from cognition to communication—ethical discussions are expanding to consider the moral status of plants. Should plants be respected as beings with intrinsic value, or are they merely instrumental resources for human use?

Environmental ethics has often distinguished between instrumental and intrinsic value. The instrumental perspective regards plants primarily as means to human ends—sources of food, medicine, and ecosystem services—shaping conservation policies but often overlooking the inherent worth of plant life itself. Conversely, the intrinsic value position argues that plants possess worth independent of their utility, deserving moral respect and protection for their own sake (Callicott, 1994).

Indigenous philosophies frequently embody this intrinsic respect. Many Indigenous worldviews conceive of plants as relatives or persons, emphasizing reciprocal relationships and stewardship rather than domination (Cajete, 2000). These perspectives reject anthropocentrism and recognize the deep interconnectedness of all life forms, fostering ethical obligations that extend beyond human interests.

Within the Agency–Process–Scale (APS) framework, ethical consideration for plants arises naturally from their status as agential, processual beings embedded in dynamic ecological networks. Plants’ capacity for adaptive self-regulation and participation in multiscale relational processes grounds a non-anthropocentric ethic—one that respects plant life not merely for utility or sentience, but as vital participants in the shared web of life.

Contemporary bioethical discourse grapples with these ideas amid pressing ecological crises. Some ethicists advocate for plant rights or legal protections reflecting their biological agency and ecological importance (Cooper, 2020). Others caution against conflating plant life with sentient beings, emphasizing differences in experience and vulnerability. Yet expanding ethics to include plants invites a profound reorientation of human attitudes toward the natural world.

This shift challenges hierarchical dualisms—such as mind/body and human/nature—and encourages a relational ethic that honors interdependence, humility, and care. Recognizing plants as agents engaged across scales—from cellular processes to ecosystems—calls for ethical frameworks that appreciate their role as co-creators of life’s continuity and flourishing.

In conclusion, whether framed through philosophical argument, Indigenous wisdom, or legal innovation, the question of respecting plant life is central to evolving environmental ethics. It compels us to reconsider moral standing and broaden the circle of ethical concern in light of scientific insights and ecological realities.

8. Challenging Human Exceptionalism

The philosophy of plants fundamentally challenges the long-standing assumption of human exceptionalism—the belief that humans are categorically distinct and superior to other forms of life, particularly regarding intelligence, consciousness, and moral worth. By revealing sophisticated cognitive-like capacities and forms of agency in plants, this field destabilizes the traditional hierarchies that privilege neural, animal-based intelligence and opens up new ways to think about mind and life.

Historically, intelligence has been equated with brain-based cognition, consciousness, and language, qualities presumed unique to humans or at least animals with complex nervous systems. Plant philosophy disrupts this view by demonstrating that intelligence can be embodied and distributed, taking non-neural forms adapted to different life histories (Calvo & Keijzer, 2020). This decentering invites comparison with animal cognition studies that continue to expand notions of intelligence across species, such as cephalopods, birds, and social insects, all challenging anthropocentric models.

Beyond biology, the rise of artificial intelligence (AI) and machine learning further problematizes traditional definitions of intelligence. Non-biological systems can perform cognitive tasks, learn, and adapt without consciousness or biological bodies. This convergence supports a more processual and functional view of intelligence that transcends particular substrates—whether brains, circuits, or plant tissues (Burge & Huebner, 2021). Plant philosophy contributes to this broader discourse by highlighting the diversity of cognitive forms in living systems.

Philosophically, these developments align with posthumanist thought, which critiques human exceptionalism and advocates for decentering the human subject within ecological and ethical frameworks. Posthumanism calls for embracing nonhuman intelligences, including plants, as co-constitutive agents within shared worlds (Braidotti, 2013). Recognizing plant agency and cognition thus fosters ontological pluralism, enriching our understanding of life and mind beyond anthropocentric limits.

In challenging human exceptionalism, plant philosophy urges a reconsideration of moral value, epistemology, and ontology. It encourages humility and openness to forms of life and intelligence that have long been overlooked or dismissed. This shift has profound implications for science, ethics, and our relationship to the living world.

Within the APS framework, challenging human exceptionalism involves recognizing intelligence and agency as emergent properties of living processes that operate across multiple scales and substrates. This decentering enriches scientific and philosophical approaches by revealing diverse cognitive forms beyond the neural and animal-centric paradigms.

9. The Future of Green Philosophy

As contemporary theoretical biology advances—especially through frameworks like the Agency–Process–Scale (APS) approach—the philosophy of plants is emerging as a vital pillar of a broader green philosophy. This integrative perspective synthesizes cutting-edge scientific insights with deep philosophical inquiry, reshaping our understanding of life, ethics, and the evolving relationship between humans and nature.

Central to this green philosophy is the recognition, grounded in biological theory, that plants are not passive resources or mere background to human activity but active agents exhibiting unique forms of intelligence, communication, and agency. This scientific grounding challenges entrenched dualisms and hierarchies, inviting a profound ontological shift: humans are not separate or superior but deeply interconnected with—and dependent upon—complex vegetal life systems. Such a shift demands humility and respect, positioning humanity not as dominators but as participants within the dynamic web of life (Haraway, 2016).

In the environmental humanities, plant philosophy fosters interdisciplinary dialogue that bridges ecology, ethics, cultural studies, and Indigenous knowledge systems. Together, these fields craft new narratives that honor plant vitality and complexity, with tangible implications for conservation, sustainable agriculture, and climate justice. These practical outcomes underscore the moral and ecological urgency of protecting plant diversity and ecosystems essential to planetary health.

Ethically, this green philosophy challenges traditional anthropocentric moral boundaries, advocating expanded circles of concern that recognize non-animal life as deserving of care and protection. Rooted in an understanding of biological agency and relationality, it promotes frameworks of stewardship based on symbiosis, reciprocity, and sustained ecological flourishing (Gruen, 2015).

Looking ahead, plant philosophy—anchored in contemporary biology—will be pivotal in redefining life itself. It encourages a pluralistic and dynamic conception of intelligence, agency, and sentience that transcends animal-centric and neurocentric models, better reflecting the rich diversity of biological systems.

Ultimately, the future of green philosophy, informed by the evolving science and philosophy of plants, offers a hopeful vision for humanity’s place in nature: one characterized by interdependence, ethical responsibility, and profound respect for the countless forms of life that sustain our planet.

10. The Importance of Plant Philosophy

The philosophy of plants offers a transformative lens for reexamining fundamental questions about life, intelligence, and ethics. By revealing the complexity, agency, and deep relationality intrinsic to plant life, this field challenges long-standing assumptions that have confined cognition and moral value primarily to animals or humans. Plants emerge not as passive or inert background entities but as active, adaptive agents essential to the flourishing of ecosystems and the biosphere.

In an era defined by environmental crisis, biodiversity loss, and climate change, philosophical inquiry into plants is more urgent than ever. Plants underpin Earth’s life-support systems—they regulate climate, produce oxygen, sustain food webs, and maintain soil health. Their vitality is directly tied to human survival and well-being. Recognizing their intrinsic value and unique forms of biological agency invites more ethical, sustainable, and reciprocal relationships with the natural world.

Crucially, plant philosophy bridges scientific discovery with ethical reflection and metaphysical inquiry. It calls on scholars, policymakers, and the public to “think with plants”—to adopt perspectives shaped by vegetal modes of sensing, processing, and relating. This shift broadens intellectual horizons and fosters humility, respect, and care for the living world grounded in an understanding of agency as a multiscale, processual phenomenon.

Ultimately, the philosophy of plants matters because it expands our conception of what it means to be alive and challenges us to cultivate a more inclusive, compassionate, and sustainable vision of life on Earth—one that honors the interconnected, agential nature of vegetal and all living systems.

Related articles

This article is one of a series investigating a 'new biology' that gives full consideration to biological agency and its relationship to human agency. These articles are introduced in the article on biological explanation which considers the forward-looking biological explanatory emphasis on ends, goals, purposes, functions, and agency.  Much of the discussion revolves around the scientific appreciation and accommodation of real (genetically inherited) purposive (teleological, teleonomic) goal-directedness (agency) that is a universal distinguishing feature of life. The series also discusses the nature of biological classification and the way we classify 'everything' in our worldviews and modes of representation.

Human agency is a limited, conscious, and highly evolved form of biological agency. While it is currently conventional to treat biological agency as a human creation - the reading of human intention into nature - this website explores the claim that it was biological agency that gave rise to human bodies and human subjectivity - that, in this temporal sense, biological agency is prior to human agency.

The suite of articles exploring biological agency ranges across topics in theoretical biology and the philosophy of biology, including:

Processes - how biology is more concerned with process than structure or things.
Synthesis and analysis - the biological legacy of analytical reductionism.
What is life? - the crucial role of organisms and their agency agency in determining purpose, values, and what it is to be alive. How agency gives meaning to biological structures, processes, and behavior and must therefore take precedence in biological explanation.
Biological axiom - how this biological principle establishes the necessary behavioral (agential) conditions for all life as the universal, objective, and ultimate biological goals that give organisms - including their structures, processes, and behaviors - biological meaning.
Purpose - the history of the notion of purpose (teleology) including eight potential sources of purpose in biology.
Biological agency - as an account of the nature of biological agency.
Human-talk - the application of human terms, especially cognitive terms, to non-human organisms.
Being like-minded - the way our understanding of the minded agency of human intention is grounded in evolutionary characteristics inherited from biological agency.
Biological values - the grounding of biological values, including human morality, in goal-directed organismal behavioral propensities that express a universal behavioral orientation or perspective on existence (biological normativity).
Evolution of biological agency - the actual evolutionary emergence of human agency out of biological agency.
Plant sense, Plants make sense, and Plant intelligence addressing the rapidly developing research field of pre-cognitive agency in plants.
Biological hierarchy - the explanatory problem of levels, scales, and perspectives in biology.
The organism - the case for an organism-centered biology in which organisms as biological agents are the foundational functional units of biological organization.
Structures, processes, and behaviors - an introduction to biology that avoids the confusion of 'levels of existence'.

The biological axiom establishes the necessary behavioral (agential) conditions for all life. These are the universal, objective, and ultimate biological goals that give structures, processes, and behaviors biological meaning. Without at least an implicit understanding of these goals, biological explanations are an incoherent collection of unrelated facts so, in this sense, agency and function take explanatory precedence in biology. The structures, processes, and behaviors that make up the subject matter of biology may be compared in terms of both their structural-evolutionary history and functional equivalence.

The internal processing required to generate the organismal behavior summarized in the biological axiom can be conceptually framed as biological cognition. On this understanding human cognition[8] is a species-specific and highly evolved form of biological cognition. Theoretical biology does not have a terminology to distinguish between structurally different but functionally equivalent forms of biological cognition. It therefore resorts to the terminology of human cognition (as cognitive metaphor). Though word meanings cannot be changed at will, in science it is possible to refine categories and concepts to better represent the world.[73] 

APS Glossary

Agency – the capacity of a living system to initiate and coordinate actions that sustain its own viability. Agency involves sensing, responding, regulating, and adapting in ways that preserve the system's identity. It is the defining condition of life—not a metaphor, but a biologically grounded property.

Agent – a system that enacts agency. In APS, an agent is any living process that actively maintains itself through internal regulation and external interaction. Agents can be as small as a cell or as large as an ecosystem, depending on the scale of coordinated activity.

APS Framework (Agency–Process–Scale) - A theoretical framework that redefines life in terms of biological agency (self-organizing, goal-directed activity), process (dynamic, self-sustaining organization), and scale (multilevel and temporal coordination). APS provides a naturalized, non-reductionist foundation for understanding living systems, emphasizing causality, function, and evolution as emergent from agent-driven processes across scales. It offers a coherent alternative to gene-centrism and mechanistic reductionism, restoring purpose and cognition as scientifically valid, biologically grounded concepts.

Behavior – the outward expression of agency through activity that modifies internal or external conditions. Behavior includes movement, chemical signaling, structural change, and interaction with the environment. It reflects the agent’s ongoing effort to meet its biological imperative.

Biological Imperative – the intrinsic tendency of living systems to maintain and regenerate the conditions necessary for their own existence. This imperative drives all forms of biological activity and makes agency necessary. It is not an externally imposed goal but a built-in demand of being alive.

Causation - Reciprocal - Short defn: Mutual influence among system components, where each affects and is affected by the others over time. Long defn: Reciprocal causation refers to the dynamic interplay among components of a system, in which each influences and is influenced by the others over time. Rather than proceeding in a single direction, causality unfolds through feedback loops and context-sensitive regulation, such that system behavior emerges from ongoing mutual adjustments. This form of causation is central to biological systems—for example, in gene–environment interactions, where genes shape phenotypes that alter environments, which in turn affect gene expression, or in organism–niche co-construction, where organisms modify their environments in ways that reshape their own future evolution. Reciprocal causation resists simple, linear explanation, emphasizing that biological systems are co-determined and dynamically coordinated. Recursive - Short defn: Self-reinforcing or self-modifying causation, where processes re-enter and influence their own conditions over time. Long defn: Recursive causation refers to causal processes that re-enter or act upon themselves, generating iterative, history-sensitive effects. Unlike linear causation, which moves from cause to effect in a one-way sequence, recursive causation involves cycles in which prior states shape current dynamics, and present activity modifies future potential. This is fundamental to biological systems where development, regulation, learning, and evolution all depend on processes that are both shaped by and shape their own trajectories. For example, developmental feedback loops can alter gene expression patterns that persist into adulthood, and evolutionary change can restructure the very conditions that govern further selection. Recursive causation enables living systems to sustain themselves while flexibly reorganizing over time.  While both reciprocal and recursive causation describe non-linear dynamics, they differ in structure: reciprocal causation involves mutual influence among distinct components, whereas recursive causation describes re-entry of influence within a single process across time. Both are essential to understanding biological agency, where living systems do not merely respond to causes, but co-create and modulate their own conditions of existence.

Cognition – the capacity of living systems to sense, evaluate, and respond to their environment in ways that are functionally meaningful. In APS, cognition is not limited to nervous systems but is a general property of biological agents, enabling adaptive behavior and regulation.

Functional Primacy – APS departs from the traditional symmetry between structure and function by prioritizing function—understood as dynamic, regulatory activity—as foundational to biological identity. While structure provides the physical substrate, it is the capacity to coordinate and sustain life-sustaining processes that defines agency and purpose.

Inheritance – the process by which biological systems pass on the capacity for agency and regulation—not just genetic information but functional organization and context-sensitive responses. APS treats inheritance as multiscale and processual, encompassing both material and behavioral continuity.

Level – a conceptual framework that organizes biological systems into discrete, often hierarchical strata such as genes, cells, tissues, organisms, and ecosystems. APS critiques the reification of levels as fixed tiers, emphasizing processual continuity and relational integration.

Life – a living system is one that actively generates, sustains, and regulates its own organized existence through agential, processual, and scale-dependent interactions with its environment. Life is not defined by any single structural feature (e.g., DNA, cells), but by the dynamic organization that enables persistence, adaptive regulation, and evolutionary continuity. This definition distinguishes the living from the inanimate and dead by grounding life in biological agency—the capacity to initiate and coordinate self-sustaining activity across multiple interacting spatial and temporal scales.

Naturalized Cognition – APS reinterprets cognitive terms such as thinking, wanting, or feeling as biological functions rather than mental states. Cognition is treated as a scalable, evolutionarily grounded property that manifests through functional behavior, not mental experience.

Naturalized Purpose – purpose understood as an intrinsic, biologically grounded outcome of agency. APS rejects supernatural, mental, or externally imposed teleology, framing purpose as the evolved tendency of living systems to persist and regulate themselves in adaptive, goal-directed ways.

Organism – a coherent, multiscale biological system that constitutes a locus of agency, integrating internal processes to regulate, maintain, and adapt its own conditions of existence. Organisms are individuated by functional integration and evolutionary continuity, not just physical boundaries.

Persistence – the capacity of a biological system to sustain itself across time through ongoing regulation, repair, and adaptation. In APS, persistence is not mere survival but the active, coordinated maintenance of viability under changing conditions.

Process – the continuous, dynamic activity through which life is maintained, changed, and transmitted. APS treats life not as a thing but as a network of interdependent processes—metabolic, developmental, ecological, evolutionary—that together enact agency.

Scale – a relational and dynamic perspective used to examine biological phenomena according to the granularity or extent of process, interaction, or organization. In APS, scale is not hierarchical but situational: different processes or agents become salient at different scales depending on context.

Scaling – in APS, scaling refers to the relational understanding of how biological processes vary across degrees of organization—not as fixed “levels,” but as dynamic patterns of function and interaction. APS emphasizes both spatial and temporal scaling to capture the continuity of agency and function across time and structure.

Transformation – the reorganization of structure or function within a biological system that preserves or enhances its viability. Transformation occurs through development, adaptation, or evolution and is a central feature of life understood as a process.

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The Nature of Life

In contemporary science, life is often characterized as a subset of matter that has been shaped by natural selection. According to this widely accepted view, living systems are semi-autonomous entities whose form and function result from the accumulation of genetic information filtered through the sorting algorithm of evolution. Consciousness, in this framework, emerges as a further refinement in certain organisms, and human cognition is seen as a peak of complexity—distinguished by foresight, abstract reasoning, and language. This model implicitly treats life as an outcome of past selection acting on otherwise inert matter, with agency and purposiveness reserved for sentient or human organisms.

In contrast, the APS and biological imperative perspective reframes life not as a passive product of evolutionary sorting, but as a dynamic, self-organizing process grounded in biological agency. Life, in this view, is defined by an intrinsic imperative—to persist, grow, regenerate, and reproduce—manifest in the capacity of living systems to regulate themselves and interact adaptively with their environments. This imperative gives functional expression to the biological axiom, while agency provides the means by which it is enacted. Agency is not limited to sentient organisms; it is present from the simplest cells to the most complex ecosystems. Rather than drawing categorical boundaries between physics, life, and mind, APS emphasizes the continuity of processes across scales, where new forms of function and organization emerge through nested coordination.

Whereas mainstream views often treat life as a subset of matter governed by physical laws and historical selection, the APS framework sees life as a distinctive organization of matter—defined by its active, purposive engagement with the world. Consciousness and cognition are thus not departures from biology, but elaborations of this fundamental agential capacity. From this standpoint, the disjunctions often posited between inert matter, life, mind, and culture dissolve into a continuum of processes, unified by their capacity to sustain, coordinate, and evolve meaningful activity within complex environments.

Life, Agency, and the Biological Imperative

  What is life? In the Agency–Process–Scale (APS) framework, life is most coherently defined by the biological imperative—the intrinsic tendency of living systems to sustain, adapt, and regenerate their own organized existence across time. This imperative is not a metaphor or heuristic but a scientifically grounded propensity that unifies life’s continuity, coherence, and capacity for evolution.

  The biological axiom—that organisms survive, reproduce, adapt, and evolve—describes what life must achieve. The biological imperative explains how: it expresses the internal drive that distinguishes living systems from non-living matter. Unlike any specific structure or trait, the imperative identifies a system-level orientation enacted through sustained, self-organizing activity.

  Biological agency is the means by which the biological imperative is realized. Agency is the capacity of a system to coordinate internal processes and environmental interactions in ways that promote its own viability. It is not a fixed trait, but a dynamic, multiscale process—sensitive to context, shaped by evolution, and expressed in behavior. While the imperative defines the condition of being alive, agency defines how that condition is enacted and maintained in practice.

  Genes contribute critically by storing and transmitting viable organizational patterns, and natural selection shapes which patterns persist. But neither genes nor selection define life in themselves. The biological imperative precedes them both: life emerges from the capacity to maintain functional coherence in the face of change. Without agency enacting this imperative, there would be no evolutionary process for selection to act upon. In this sense, selection shapes the forms agency takes, but agency underpins the evolutionary process itself.

  The most direct manifestation of the biological imperative is behavior—the system-level coordination of perception, regulation, and action aimed at maintaining functional integrity. Such behavior is not confined to movement or sentience, but includes any organized, adaptive response to internal or external change, across all forms of life.

  The biological imperative is not an external goal or fixed endpoint, but an emergent, internal orientation: the organized propensity of life to persist, adapt, and regenerate itself. Through this lens, life is defined not by structure or program, but by the agency that enacts this imperative across time. It is this integration of imperative and agency that grounds the APS framework’s naturalized, processual, and scalable theory of life.

Life: In Principle & Practice

Life, in principle, is defined by a system’s capacity to survive, reproduce, adapt, and evolve—a set of minimal conditions referred to here as the biological axiom. These criteria mark the threshold between living and non-living systems by identifying what is required for persistence across generations under evolutionary dynamics.

In practice, these abstract conditions are realized through the biological imperative: the intrinsic tendency of living systems to sustain, adapt, and regenerate their own organized existence over time. Where the axiom defines what life must achieve to count as living, the imperative describes how life actually achieves it—through self-organizing, internally coordinated processes that maintain viability.

This distinction is critical. The axiom sets the theoretical boundary of life; the imperative reveals its lived dynamics. Considered separately, each has limits: the axiom can appear static and formal, the imperative open-ended and descriptive. But taken together, they offer an integrated account of biological agency: the capacity of a system to act on its own behalf, guided by internal norms aimed at continued existence.

Biological agency arises from this coupling. Organisms enact the imperative because they fulfill the axiom; they are self-regulating systems shaped by evolutionary necessity. Agency is not imposed from outside, but emerges from the need to remain viable, adaptive, and self-renewing in a changing world.

This framework reveals three interrelated conceptual layers: the ontological (what life is), the functional (what life does), and the theoretical (how life is explained).

Evolution, while not enacted by individual organisms, remains a core part of the axiom, ensuring continuity between organismal activity and long-term evolutionary outcomes.

   The Organism

Biology is the study of agentive systems—their components, capacities, and coordinated interactions across scales. This perspective is foundational to the APS (Agency–Process–Scale) framework, which integrates organisms, their parts, and their ecological and evolutionary contexts within a unified, process-centered science of life.

The organism is a key unit of analysis in APS biology—analytically, methodologically, epistemically, and ontologically. As a coherent, self-maintaining, and adaptively regulated system, the organism exemplifies multiscale biological agency. It serves as a primary reference point for classification (as in species), ecological integration, and evolutionary transformation, and is central to biological description and explanation.

Although the parts of organisms—structures, processes, and behaviors, including genes and cells—exhibit localized autonomy and function, their agency is embedded within and coordinated by the higher-order adaptive dynamics of the whole organism. Organisms operate as multiscale, self-determining agents that integrate and regulate their components toward system-level goals. They therefore constitute major causal nexuses in the biological web of interdependence, expressing a degree of agential coherence not found at lower or broader organizational scales.

Overemphasis on explanatory 'levels' such as molecular genetics reflects a fragmented, hierarchical bias that obscures the organizing role of scale in biological systems (see biological hierarchy). The APS approach replaces this with a scale-sensitive framework grounded in functional integration and processual continuity.

Organisms are biological agents: they act on and respond to their conditions of existence in flexible, adaptive ways. While agency is often narrowly associated with sentience, intention, and deliberation—hallmarks of human cognition—it is more broadly manifested in the capacity of all organisms to pursue survival, reproduction, adaptation, and evolutionary persistence. Human agency is thus a complex, highly elaborated, and evolutionarily constrained subset of this general biological capacity.

Adaptation involves not only long-term genetic change but also short-term sensing, evaluation, and response—functions of biological cognition expressed across lineages and organizational scales. These informational and functional processes underlie agency and behavior, whether in bacteria or humans. Human cognition is a specialized, conscious variant of a more general, biologically grounded cognitive capacity.

As a functionally integrated, adaptive, and self-organizing system, the organism embodies a biologically cognitive 'self'—a natural subjectivity grounded in agency and process. This makes the organism a privileged scale for biological explanation within the APS framework, where scale is determined not by size or level but by functional coherence and agential integration.

Agency, Process, Scale (APS)

The Agency–Process–Scale (APS) framework (Spencer, 2025) offers a reimagining of life that places biological agency—the capacity of living systems to regulate, adapt, and pursue functional outcomes—at its center. Rejecting static classifications and anatomical checklists, APS portrays life as a dynamic and multiscale orchestration of purposeful activity, from cells to ecosystems. Where traditional biology leans on mechanistic, bottom-up models and rigid hierarchies, APS emphasizes reciprocal, relational processes that sustain coherence across scales. It seeks not merely to describe what organisms are made of, but to understand what they do to persist and evolve. In contrast to fragmented disciplinary approaches, APS integrates insights from genetics, physiology, ecology, and beyond, uniting them under the functional lens of agency. It reframes cognition, adaptation, and development as expressions of a system’s intrinsic capacity for self-maintenance and evolutionary participation. Rather than reducing biological meaning to molecular mechanisms, APS broadens the scope of inquiry to include plant intelligence, microbial communication, and non-neural cognition—domains often overlooked or marginalized. Ultimately, APS defines life not by structural traits but by its recursive enactment of purposive function across scale, offering a cohesive theory grounded in agential organization and processual integration.

For the APS (loosely):

   Agency - the capacity to act
   Biological imperative - goal of action
   Process - how the goal is pursued
   Scale - where/when action occurs

   Functional Equivalence

Biological objects may be compared from at least two evolutionary perspectives – their physical ancestry, and functional equivalence. So, for example, likening the behavior of humans and plants by talking about both plant cognition and human cognition does not necessarily mean that plant experiences are the same as human experiences. This is not an equivalence of evolutionary structures, processes, behaviors, and experiences (homologs) but an equivalence of functions (analogs).

Physical functional equivalence, such as the wings of birds and butterflies, can be empirically validated. However, psychological equivalence is more contentious as it relies on interpretive frameworks influenced by our understanding of consciousness and cognition. So, for example, saying a plant ‘wants’ water seems blatant cognitive metaphor.

Assuming human agency and human cognition are highly evolved forms of more general biological traits, functional equivalence becomes more scientifically meaningful since it is grounded in empirically verifiable traits that conform to the biological axiom (to survive, reproduce, adapt, and evolve). When we say a plant ‘wants’ water, we acknowledge its observable biological behavior in response to water stress. This shifts the perspective from metaphorical fiction to functional equivalence grounded in empirical reality, with metaphor serving as a heuristic tool that resonates with human understanding.

Functional equivalence is the real, observable phenomenon, while metaphor is the figurative language used to describe and relate to it.

Using human psychological terms for non-human organisms infers functional, not physical, equivalence. It does not suggest a meeting of minds but a comparison of strategies used to address the same selection pressures - an equivalence of ultimate biological goals.  However, it does create a problem for the semantics of cognitive language (see human-talk).

   Being Mentalistic

The APS framework defines cognition, purpose, and agency as biological capacities—not as mental states or attributes of consciousness. Terms such as memory, decision, or intelligence refer to the functional organization of living systems: their capacity to sense, evaluate, and adaptively regulate internal and external conditions. Similarly, notions like reason and desire are interpreted not as propositional or affective states, but as emergent behavioral patterns grounded in physiological regulation.

APS naturalizes these concepts by interpreting them as evolutionarily grounded, functionally coherent phenomena realized through embodied, goal-directed processes across multiple scales of life. For instance, it is inaccurate to suggest that plants “reason” in a logical or inferential sense. Rather, they display context-sensitive, goal-directed behaviors that are functionally analogous to reasoning, but grounded in their physiological and ecological organization.

Terms like plant neurobiology may emphasize plant signaling processes, but APS cautions against equating these with neural structures or computation. To maintain clarity, the framework prioritizes functional equivalence over structural analogy, underscoring that human mental faculties are elaborations of more basic biological agency—not fundamentally separate. This distinction avoids anthropomorphism while acknowledging cognition as a scalable property of life.

Thus, APS does not deny that plants exhibit intelligent or cognitive-like behavior. Instead, it emphasizes that such capacities—sensing, evaluating, adapting—can be understood as biological functions without invoking mental states or conscious experience. The concern is not whether plants are cognitive, but how cognition is conceptualized and described. Terms like memory or decision are appropriate when used to denote functional and adaptive organization—not introspective thought. In this way, avoiding mentalistic metaphors helps naturalize cognition rather than exclude it.

The broader application of cognitive language to non-human organisms reflects a significant philosophical, semantic, and scientific shift. Philosophically, it challenges human exceptionalism and dualism by framing agency and cognition as embodied, emergent capacities distributed across life. Semantically, metaphors like decision or communication can elucidate biological complexity but require careful use. Scientifically, this shift grounds mentalistic terms in evolutionary and functional processes, revealing how even non-neural organisms engage in regulation, responsiveness, and adaptive behavior. This reconceptualization supports a multiscale, processual view of biology in which cognition is not exclusive to brains but a fundamental aspect of living systems—enabling comparative models while avoiding conflations with consciousness.